DreEX6073489 @ danRer10
Exon Skipping
Gene
ENSDARG00000010728 | scin
Description
scinderin [Source:ZFIN;Acc:ZDB-GENE-060503-6]
Coordinates
chr19:31773916-31785583:-
Coord C1 exon
chr19:31785344-31785583
Coord A exon
chr19:31777826-31777980
Coord C2 exon
chr19:31773916-31774077
Length
155 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTCTCTGTCTAGGTA
3' ss Score
10.26
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTACACAGACGTCTGCCTCTCCACATCTGCACACATCGCTCTCAGATATGGTGCTTCACCACAAAGAGTTTGAGAAGGCTGGCAAGTACTCCGGTCTCCAAATATGGAGAATCGAAAAGATGGAAATAGTACCCGTGCCTGAAAGCTTTTATGGGAGCTTTTATACAGGTGATGCCTACCTGGTGCTGCACACTGTTAAACAGAAAGACTCGAGCTTCTACGATCTGCATTTCTGGCTGG
Seq A exon
GTAAGGAATGTTCTCAAGATGAAAGTACAGCAGCAGCCATCTTTTCAACTCAAATGGATGACTACCTGGGAGGTAAACCAGTTCAGTATCGTGAAATCCAGGGTTTTGAGTCCACCGTCTTCACCAGCTACTTCAAAGGCGGGATAAAGTATAAG
Seq C2 exon
AGTGGTGGAGTGGCATCAGGATTTCAACATGTGATCACCAATGATCTTACAGCCCGGAGACTCTTCCATATTAAGGGCAGGCGAACTGTCCGGGCCACAGAAGTTCCTCTCAGCTGGGCCAGTTTCAACAACGGTGACTGTTTCATTGTTGATCTGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010728-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=63.1)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(34.2=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCTGCACACATCGCTCT
R:
AATCCTGATGCCACTCCACCA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]