MmuEX6080795 @ mm9
Exon Skipping
Gene
ENSMUSG00000002565 | Scin
Description
scinderin [Source:MGI Symbol;Acc:MGI:1306794]
Coordinates
chr12:40851154-40860770:-
Coord C1 exon
chr12:40860497-40860770
Coord A exon
chr12:40854468-40854622
Coord C2 exon
chr12:40851154-40851315
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTGTGTTGGTTTCAGGAA
3' ss Score
8.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACCGGTCATCGGGCTCTTCCTTGGGCTCAGGGCACGGATCAAGTCCTCGGCTCGCTCGGCCAGCATCGCGGCACCATGGCGCAGGAGCTGCAGCACCCCGAGTTCGCGCGCGCAGGCCAGCAGGCTGGGCTGCAGGTGTGGAGGGTCGAGAAGCTGGAACTGGTACCGGTGCCCCAGGGTGCCTATGGTGACTTTTACGTCGGAGACGCCTACCTGGTGCTGCACACCACCAAGTCCAGCAGGGGCTTCTCCTACCGCCTGCATTTCTGGCTGG
Seq A exon
GAAAGGAGTGTTCCCAGGATGAGAGCACAGCGGCTGCCATCTTTACGGTCCAGATGGACGACTATTTGGGTGGCAAGCCAGTCCAGAGCAGAGAGCTTCAAGGCTATGAGTCGACTGATTTTGTGGGCTATTTCAAAGGCGGTCTGAAGTACAAG
Seq C2 exon
GCTGGAGGTGTGGCTTCTGGACTAAACCATGTCCTCACCAATGATCTGACTGCGAAAAGACTTCTGCACGTGAAGGGTCGGAGAGTGGTCAGAGCCACTGAAGTTCCCCTCAGCTGGGAGAGCTTCAACAAGGGCGACTGCTTCATCATTGACCTTGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002565-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=61.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(34.2=48.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGTGCCTATGGTGACTT
R:
TCAATGATGAAGCAGTCGCCC
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: