BtaEX6029697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021941 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr4:117584028-117605267:+
Coord C1 exon
chr4:117584028-117584125
Coord A exon
chr4:117603494-117603617
Coord C2 exon
chr4:117605229-117605267
Length
124 bp
Sequences
Splice sites
3' ss Seq
CAGCGCGCCCTCTGTTGCAGGGA
3' ss Score
7.63
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCCGGCTGTGAAAACCCCAGCATCTCCCTGCACGTCATTGGCCTGAATGGACCCACGCACGACCTGGAGATGACGCCGCCTGATGACCCGAGGATGAG
Seq A exon
GGAGTACTACATCACCATGGTCAAGTGGGCCACCAGCACCAAGGTCGCCGTGAACTGGCTGAGCCGGGCGCAGAACGTGTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACCAAG
Seq C2 exon
AAACATGAGGATGAAAGTGAAGCCTGGCTGCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021941-'3-5,'3-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(10.4=100)
A:
PF0093016=DPPIV_N=FE(13.4=100)
C2:
PF0093016=DPPIV_N=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAAAACCCCAGCATCT
R:
GTCTGTGCAGCCAGGCTTC
Band lengths:
131-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]