RnoEX6012096 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4096788-4123856:-
Coord C1 exon
chr4:4123759-4123856
Coord A exon
chr4:4098264-4098387
Coord C2 exon
chr4:4096788-4096826
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTTTGTGTTTTCAGAGA
3' ss Score
9.22
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GCTGGCAGTGAAAACCCCAGCATCTCCCTCCACGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGACGACCCCCGCATGAG
Seq A exon
AGAGTATTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTTGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCCATCCTGACCCTCTGTGATGCCACCACAGGTGTCTGCACTAAG
Seq C2 exon
AAACACGAGGATGAAAGTGAAGCTTGGCTCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547-'24-33,'24-32,26-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.2=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAAAACCCCAGCATCT
R:
CTGTCTGTGGAGCCAAGCTTC
Band lengths:
133-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]