HsaEX6011429 @ hg19
Exon Skipping
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:3010]
Coordinates
chr7:154564555-154587593:+
Coord C1 exon
chr7:154564555-154564652
Coord A exon
chr7:154585789-154585912
Coord C2 exon
chr7:154587555-154587593
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTTGGCGTTTCCAGGGA
3' ss Score
8.41
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GCTGGAAGTGAGAACCCCAGCATTTCCCTACACGTTATTGGCTTAAATGGACCCACCCATGATCTGGAGATGATGCCGCCTGATGATCCACGGATGAG
Seq A exon
GGAGTACTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTCGCCGTGACCTGGCTGAACCGGGCGCAGAACGTGTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACGAAG
Seq C2 exon
AAACACGAGGATGAAAGTGAGGCCTGGCTCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-'14-21,'14-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.2=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGAGAACCCCAGCAT
R:
TCTGTGGAGCCAGGCCTC
Band lengths:
132-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)