DreEX6093924 @ danRer10
Exon Skipping
Gene
ENSDARG00000076826 | dpp6a
Description
dipeptidyl-peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-090918-4]
Coordinates
chr24:6696868-6698935:-
Coord C1 exon
chr24:6698838-6698935
Coord A exon
chr24:6697284-6697407
Coord C2 exon
chr24:6696868-6696906
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGTCTATATTGCAGGGA
3' ss Score
9.42
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GCAGGAGAGGAAAATCCTGTCATTTCTTTGTATGTGGTGAATCTCAATGGGCCTCTGCACACTATTGAGATGAGAAGACCAGAGGACCAAAGAATAGG
Seq A exon
GGAGTACTATGTGACAATGGTGAAGTGGGCCACAAGTACCAAACTAGCTGTAAACTGGCTGAACCGTGCACAGAATATCTCCATCCTGACCCTCTGCGTGGCCACAACGGGTGTCTGCACTAAG
Seq C2 exon
AAACACGAGGATGAAAGTGAAGGGTGGCTGCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076826-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.2=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTCATTTCTTTGTATGTGGTGA
R:
TGTCTGTGCAGCCACCCTTC
Band lengths:
122-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]