GgaEX6018394 @ galGal3
Exon Skipping
Gene
ENSGALG00000006314 | DPP6
Description
NA
Coordinates
chr2:7534611-7539683:+
Coord C1 exon
chr2:7534611-7534708
Coord A exon
chr2:7539000-7539123
Coord C2 exon
chr2:7539645-7539683
Length
124 bp
Sequences
Splice sites
3' ss Seq
TAACTCCTCTGTGCTTTCAGGGA
3' ss Score
9.49
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTGGAATGGAAAATCCAACTATTTCTTTGCATGTGATTGGTCTGAATGGACCTGCCCATGATCTAGAGATGATTCCCCCAGATGATCAGAGACTGAG
Seq A exon
GGACTATTACATCACCATGGTAAAGTGGGCTACCAGCACCAAGGTGGCAGTGAACTGGCTGAACAGGGCCCAAAACTTCTCCATCCTGACACTGTGCGATGCGACCACAGGCGTCTGTACCAAG
Seq C2 exon
AAACATGAAGATGAAAGTGAAGGTTGGCTGCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.2=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTATTTCTTTGCATGTGATTGG
R:
CTGTCTGTGCAGCCAACCTTC
Band lengths:
122-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]