DreEX6025952 @ danRer10
Exon Skipping
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12747271-12750562:-
Coord C1 exon
chr2:12750465-12750562
Coord A exon
chr2:12749882-12750008
Coord C2 exon
chr2:12747271-12747309
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAGTTTTTTTTTTTTACAGGAA
3' ss Score
9.79
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCTGGGGAGGAAAACCCTGAGATCTATTTGTCAGTGGTGAGTCTGAACGGCCCCTTACACACAGTGAGGATGAAGAAACCAGAGGATCCCAGAATCAG
Seq A exon
GAAAGATTACTACATCACTATGGTGAAGTGGGCAACCAGCACCAAACTAGCAGTAAACTGGCTGAACCGAGCACAAAACAGCTCAATTCTGACCTTATGTGAGGCCACTACTGGCATCTGCACAAAG
Seq C2 exon
AAACATGAAGATGAGAGTGACAGCTGGCTTCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744-'13-14,'13-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.615
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.5=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAACCCTGAGATCTATTTGTCA
R:
CTGTCTGTGAAGCCAGCTGTC
Band lengths:
130-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]