MmuEX6016492 @ mm10
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27634509-27653738:+
Coord C1 exon
chr5:27634509-27634606
Coord A exon
chr5:27652177-27652300
Coord C2 exon
chr5:27653700-27653738
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTTTGTGTTCTCAGGGA
3' ss Score
9.49
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGGCAGTGAAAACCCCAGCATCTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACCTGGAGATGATGCCACCTGATGACCCGCGCATGAG
Seq A exon
GGAATATTACATCACCATGGTGAAATGGGCCACCAGCACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACCACGGGTGTCTGCACTAAG
Seq C2 exon
AAACATGAAGATGAAAGCGAAGCCTGGCTCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'28-44,'28-38,33-44=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.769
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(8.7=100)
A:
PF0093016=DPPIV_N=FE(11.2=100)
C2:
PF0093016=DPPIV_N=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAAAACCCCAGCATCT
R:
CTGTCTGTGGAGCCAGGCTTC
Band lengths:
133-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types