BtaEX6035679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96312610-96315312:-
Coord C1 exon
chr8:96315091-96315312
Coord A exon
chr8:96313840-96314044
Coord C2 exon
chr8:96312610-96312723
Length
205 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCCTCTTTTGTACAGAGC
3' ss Score
6.58
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
TTAGGAAACCTGCTTCCCTACAGCGACCCCAGCGTGGTGTTTGTCTTTCTGTCTGTGTTCGCCACGGTGACCATCCTGCAGTGCTTCCTGATCAGCACGCTCTTCTCCAGAGCCAACCTGGCGGCCGCCTGTGGGGGCATCATTTACTTCATGCTATACCTGCCCTACGTCCTGTGCGTGGCGTGGCAAGACTACGTGGGCTTTACCCTCAAGATCTTCGTG
Seq A exon
AGCCTGATGTCTCCTGTGGCTTTTGGGTTCGGCTGTGAGTACTTCGCCCTTTTCGAGGAGCAGGGCATTGGGGTACAGTGGGACAACCTCTTTGAGAGCCCCACAGAGGAAGATGGCTTCAACCTCACCACCTCCGTCTCCATGATGCTGTTTGACACCTTTCTCTATGGGGTGATGACGTGGTACATTGAGGCTGTGTTTCCAG
Seq C2 exon
GCCAGTATGGAATCCCCAGGCCCTGGTATTTCCCTTGCACTAAGTCCTACTGGTTTGGCGAGGAAAGTGATGAGAAGAGCCACCCTGGTTCCAGCCACAAGGGAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(29.3=100)
A:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGCTTCCCTACAGCG
R:
AACCAGGGTGGCTCTTCTCAT
Band lengths:
308-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]