DreEX0009892 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6174875-6179997:+
Coord C1 exon
chr14:6174875-6175096
Coord A exon
chr14:6178350-6178665
Coord C2 exon
chr14:6179823-6179997
Length
316 bp
Sequences
Splice sites
3' ss Seq
CATCGATGTTGTGTCCACAGAGC
3' ss Score
9.49
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATGGGAAATCTCCTGCCCTATAGTGACCCTGGGGTCGTCTTCCTCTTCCTCGGGTCATTTGCTGTAGTGACCATCATGCAGTGTTTCCTGATCAGCACGGCGTTTGCACGTGCCAACCTGGCAGCGGCCTGCGGGGGCATCATCTACTTCACTCTCTACCTGCCTTATGTGCTGTGCGTGGCCTGGCAGGACTATGTGGGCTTCGCCGCCAAAGTCATCGCT
Seq A exon
AGCTTACTGTCTCCGGTGGCGTTTGGCTTTGGCTGTGAGTATTTTGCCTTGTTTGAGGAGCAGGGTGTGGGTATTCAGTGGAATAACCTCTTCTCCAGTCCCGTGGAAGAGGACGATTACAACCTCACCACCTGCCTCATCCTCATGTACTTTGATGCCTTCCTGTATGGGGTCATGACCTGGTACATAGAAACGGTGTTCCCAGGACAGTATGGCATTCCCAGGCCATGGTACTTCCCTTTCACTAAATCCTACTGGTTTGGAGAGAACAGCACAAACAATACTGCAATACACGGAAAGAAGAGCAATGCAGGGG
Seq C2 exon
CTGTTTGCATTGAAGAGGAACCTACTCACCTTAAACTGGGAGTTTACATTGAGAATCTGGTGAAGGTCTATCGCCATGGTAAAAAGCTAGCCGTGGATGGGTTGACACTTGGTTTTCATGAAGGTCAGATAACATCCTTCCTGGGTCACAACGGAGCTGGCAAAACCACCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.1=100)
A:
PF126982=ABC2_membrane_3=PD(18.5=57.5)
C2:
PF0000522=ABC_tran=PU(18.6=45.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCGTCTTCCTCTTCCTC
R:
CGTTGTGACCCAGGAAGGATG
Band lengths:
345-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]