MmuEX6093478 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53079571-53082143:-
Coord C1 exon
chr4:53081922-53082143
Coord A exon
chr4:53080766-53080970
Coord C2 exon
chr4:53079571-53079684
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCCTCTTTCTCTCAGAGC
3' ss Score
10.11
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
TTAGGAAACCTGCTGCCCTATAGTGACCCCAGCGTGGTGTTCGTCTTCCTGTCTGTGTTTGCCATGGTGACCATCCTACAGTGCTTCCTCATTAGCACGCTCTTCTCCCGTGCCAACCTGGCAGCAGCCTGTGGGGGCATCATCTACTTCACGCTGTACCTGCCCTATGTGCTGTGCGTAGCCTGGCAGGACTATGTGGGCTTCTCCATCAAGATCTTTGCT
Seq A exon
AGCCTGCTGTCTCCTGTGGCTTTTGGATTCGGCTGTGAGTATTTCGCCCTTTTCGAGGAGCAAGGTATCGGGGTCCAATGGGACAATCTCTTTGAGAGCCCGGTGGAGGAGGACGGCTTCAATCTCACCACTGCAGTGTCCATGATGCTCTTTGACACCTTTCTCTATGGCGTGATGACATGGTACATCGAAGCCGTCTTTCCAG
Seq C2 exon
GACAGTATGGAATTCCCAGGCCCTGGTATTTTCCTTGTACCAAGTCATACTGGTTTGGTGAGGAAATTGATGAGAAGAGCCACCCTGGTTCCAGCCAGAAGGGAGTGTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'24-29,'24-28,25-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.3=100)
A:
PF126982=ABC2_membrane_3=PD(13.6=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAGTGACCCCAGCGTGGT
R:
AACCAGGGTGGCTCTTCTCAT
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types