GgaEX0022624 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54573458-54575155:-
Coord C1 exon
chrZ:54574934-54575155
Coord A exon
chrZ:54574121-54574325
Coord C2 exon
chrZ:54573458-54573571
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTCATGTCTCTCATTTGCAGAGC
3' ss Score
11.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGGGGAATCTGCTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTTCCTCTCAATCTTTGGCATTGTGACCATCCTGCAGTGCTTTCTCATCAGCACCGTGTTCTCCAGGGCCAACCTGGCAGCTGCCTGTGGAGGCATTGTGTATTTCACTCTATACCTACCCTACGTGCTGTGTGTTGCCTGGCAGGACTATGTCAGCTTCTCGCTCAAGATCTTTGCG
Seq A exon
AGCCTGTTATCTCCAGTAGCCTTTGGCTTTGGTTGCGAGTACTTTGCACTGTTTGAAGAGCAGGGAGTTGGTGTTCAGTGGGACAACTTCTTTGAGAGCCCACTAGAAGAAGATGGCTTTAGCATCACCACATCTGCTGTAATGATGTTGTTTGACACGTTCCTCTATGGGGTCATGACCTGGTACATTGAGTCTGTCTTCCCAG
Seq C2 exon
GCCAGTATGGGATTCCCAGACCCTGGTACTTTCCTTTCACAAAATCCTATTGGTTTGGTGAAGAATCTCAGGACAGGCAGCATCTTCATCCTGACCAGAAGGGGCCCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(29.3=100)
A:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTAGTGTGGTGTTCGT
R:
GGTCAGGATGAAGATGCTGCC
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]