GgaEX0022624 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53626044-53627736:-
Coord C1 exon
chrZ:53627520-53627736
Coord A exon
chrZ:53626707-53626911
Coord C2 exon
chrZ:53626044-53626157
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTCATGTCTCTCATTTGCAGAGC
3' ss Score
11.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAATCTGCTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTTCCTCTCAATCTTTGGCATTGTGACCATCCTGCAGTGCTTTCTCATCAGCACCGTGTTCTCCAGGGCCAACCTGGCAGCTGCCTGTGGAGGCATTGTGTATTTCACTCTATACCTACCCTACGTGCTGTGTGTTGCCTGGCAGGACTATGTCAGCTTCTCGCTCAAGATCTTTGCG
Seq A exon
AGCCTGTTATCTCCAGTAGCCTTTGGCTTTGGTTGCGAGTACTTTGCACTGTTTGAAGAGCAGGGAGTTGGTGTTCAGTGGGACAACTTCTTTGAGAGCCCACTAGAAGAAGATGGCTTTAGCATCACCACATCTGCTGTAATGATGTTGTTTGACACGTTCCTCTATGGGGTCATGACCTGGTACATTGAGTCTGTCTTCCCAG
Seq C2 exon
GCCAGTATGGGATTCCCAGACCCTGGTACTTTCCTTTCACAAAATCCTATTGGTTTGGTGAAGAATCTCAGGACAGGCAGCATCTTCATCCTGACCAGAAGGGGCCCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'24-39,'24-38,25-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(28.9=100)
A:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTAGTGTGGTGTTCGT
R:
GGTCAGGATGAAGATGCTGCC
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]