RnoEX6021840 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69902131-69904716:-
Coord C1 exon
chr5:69904495-69904716
Coord A exon
chr5:69903338-69903542
Coord C2 exon
chr5:69902131-69902244
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGCCTCTTCCTCTAGAGC
3' ss Score
10.81
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
TTAGGAGATCTGCTGCCCTATAGTGACCCCAGCGTGGTGTTCGTCTTCCTCTCTGTGTTTGCCGTGGTGACCATTCTACAGTGCTTCCTCATTAGCACACTCTTCTCCCGGACCAACCTGGCAGCAGCCTGTGGGGGCATCATCTACTTCACGCTGTACCTGCCCTATGTGCTGTGTGTAGCATGGCAGGACTATGTGGGCTTCTCCATCAAGATCTTTGCT
Seq A exon
AGCCTGCTGTCTCCTGTGGCTTTTGGATTCGGCTGTGAGTATTTTGCTCTTTTTGAGGAGCAAGGCATCGGGGTCCAATGGGACAATCTCTTTAAGAGCCCAGTGGAGGAGGATGGCTTCAATCTTACCACCTCAGTGTCCATGATGCTGTTTGACACCTTCATCTATGGCGTGATGACATGGTACATCGAAGCCGTCTTCCCAG
Seq C2 exon
GACAGTACGGAATTCCCAGGCCCTGGTATTTTCCTTGTACCAAGTCCTACTGGTTTGGGGAGGAAATTGATGAGAAGAGCCACCCTGGTTCCAGCCAGAAGGGTGCGTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.5=100)
A:
PF126982=ABC2_membrane_3=PD(13.8=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGCCCTATAGTGACCC
R:
AACCAGGGTGGCTCTTCTCAT
Band lengths:
304-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]