DreEX6033537 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51965521-51967026:+
Coord C1 exon
chr1:51965521-51965742
Coord A exon
chr1:51966617-51966821
Coord C2 exon
chr1:51966913-51967026
Length
205 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTGTGTCTCCTCAGAGT
3' ss Score
11.6
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATGGGGAATCTCCTGCCGTACAGCGACCCCGGCGTCATCTACTTGTTCTTGTCCTCTTTTGCGGTGGTGACCATCATGCAGTGTTTCCTGATCAGCACACTCTTCTCTCGTGCCAATCTTGCCGCCGCCTGCGGAGGCATCATTTACTTCACGCTTTACCTGCCCTATGTGCTCTGCGTCGCCTGGCAGAACTACGTGGGCTTCGGTGCCAAAATAGTAGTG
Seq A exon
AGTCTGCTGTCTCCAGTGGCGTTCGGCTTCGGCTGTGAGTATTTCGCTCTGTTTGAGGAGCAGGGTGTGGGCATCCAGTGGAGTAATCTGCTGTCCAGCCCCATGCAGGAGGACAGCTACAACCTGACCACCTCCATCTGCCTCATGCTCTTCGATTCGGTGCTCTACGCCGTCATGACCTGGTACATCGAGGCCGTCTTTCCAG
Seq C2 exon
GTCAGTATGGCATCCCTCGACCCTGGTACTTCCCTTTCACCAAGTCATACTGGTGCGGAGAGAAATGCGGATGGACAACATCAGTGCCAAGTAACAGGAAAGAAAACGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.6=100)
A:
PF126982=ABC2_membrane_3=PD(17.2=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGAATCTCCTGCCGTAC
R:
GTCCATCCGCATTTCTCTCCG
Band lengths:
298-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]