BtaEX6036313 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112449178-112455962:+
Coord C1 exon
chr8:112449178-112449398
Coord A exon
chr8:112452404-112452580
Coord C2 exon
chr8:112455828-112455962
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATACACTGAATCTTTGCAGGAG
3' ss Score
6.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCAGATAGCAGCAAATGAAGCCCTGAAGAAGGACTTAGAAGGCGTCATCAGTGGGCTGCAGGAATACCTGGGGACTGTGAAGGGCCAGGCCGCGCAGGCCCAGAACGAGTGCAGAAGGCTGCAGGATGAGAAAGAGGCGCTGCTGCAGAGCTTGGCCCAGGTCGAGCAGGAAAGGGACCAGCTGGAAATAGTCGCCTTAGATGCAGAAAATATGAGGAAG
Seq A exon
GAGCTTGCAGAGCTAGAAAGCGCCCTTGCAGAGCAGCATGAGGTGAACGCGTCCCTGCAGCAGACCCACGGAGACCTCAGTGCCTACGAGGCTGAGTTAGAGGCGCAGCTGAGGATGAAGGATGCTGAAGCCAGCCAGCTCAAAAAAGAGCTGGGAGAACTAGCAAGGCTCAGCCAG
Seq C2 exon
CTAGAACAATCAACTCTACAAACAGAACTTGAGAAAGAAAAACAAGCCCTCAAGAACGCCCTGGGAAAAGCCCAGCTCTCGGAAGAAAAAGAACAAGAAAACAGTGAGCTCCGCACCCAGCTTAAACAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.593 C2=0.911
Domain overlap (PFAM):
C1:
PF138511=GAS=PD(63.1=87.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTGGGGACTGTGAAGGG
R:
TTTTTCTTCCGAGAGCTGGGC
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]