GgaEX0026788 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8356643-8358577:+
Coord C1 exon
chr17:8356643-8356863
Coord A exon
chr17:8357387-8357563
Coord C2 exon
chr17:8358443-8358577
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAGTGAATGTAAAATTCCAGGAA
3' ss Score
2.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAAATAGCAACAAACGAAGCACTGAAAAGGGATTTAGAAAGCATCATAATTGGATTACAGGAATACCTGGAAAGCGTTAAGCATCAAGCAAAACAGGCCAATGATGAATGTAAGGAGTTGCAGAAGGATAAAGAATCTTTGTTTCAGAGACTGGCAGATCTAGAGGATGAAAGAAATAGCCTGAAAATAGTTGTCATGGATGCCGAAAATATGAGAAAA
Seq A exon
GAAATAGCAATGCTTGAAGGCGCACTTCAAGAGCAGCGAGAAATAAATGAATCACTCAGAGAAGGACAAGGGGATGTCAGTGCCTACGAGGCTGAACTGGAAGCCCAGCTAAGAGAAAGAGACACTGAAGCCAATCAGCAAAAGGAAGAATTGGAAAGGCTGAAACAACTCAGCCAG
Seq C2 exon
ATGGAACTGTCAGCTCTGCAAGCTGAACTTGAGAAAGAAAGGCAAGCTTTAGAGAATGCTCTGACCAAAGCACAATTAGCAGAAGAGAAGGAACAAGAAAACTATAAGCTGCTTTCTCAGTTCAAACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.243 A=0.712 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATAGCAACAAACGAAGCACTG
R:
CTTGCAGAGCTGACAGTTCCA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]