DreEX6014115 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62741608-62744477:-
Coord C1 exon
chr5:62744257-62744477
Coord A exon
chr5:62741960-62742136
Coord C2 exon
chr5:62741608-62741742
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTGTTGTGTTACAGGAG
3' ss Score
10.96
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTCAGATAGCTGCTAATGAAGCGCTCAAACGTGACCTTGAGGGCATCATCTCAGGTCTTCAGGAGTATCTGCGCGGTGTGAAGGACCAAGCACGGAGAGCCCAATCAGATTGCAGACGTCTACAGAGGGAAAAAGACACTCTGCAGCACCTCTTAGACATGAAGGAGCAGGAATTCACACAGCTGGAGAATAAAGCCCTGAGTGCTGAAATCACACAGAAG
Seq A exon
GAGCTGGAGCTACAGAAGCAGGAGTTTGACAATCTGATGAAGGAGAATGAAGAACTGAAACGAGCACGAGGACAGGTCAGTGAATATGAGGCAGAGCTGGAGAGCCAACTACAGCAGAGAGATACTGAAGCCACACAGCTGAAGGAGGAGCTGGACAGACTGCGTCGACTCACTCAG
Seq C2 exon
ATGGAACACTCTGCGCTGCAGGCAGAGCTGCAGAAAGAACGACAGGCAAAGGAGAACGCTTTAGCACAAGTGCGCATGGCTGCAGACAAAGAGCTTGAGAACACACAGCTTCTGCAACAGATCAACGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=0.746 C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAATCAGATTGCAGACG
R:
GGAGAGCGTTGATCTGTTGCA
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]