RnoEX6016588 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14329089-14334018:+
Coord C1 exon
chr3:14329089-14329309
Coord A exon
chr3:14331050-14331226
Coord C2 exon
chr3:14333884-14334018
Length
177 bp
Sequences
Splice sites
3' ss Seq
AACATGCTGAACCTTTGCAGGAG
3' ss Score
5.38
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCAGATAGCAGCAAATGAAGCTCTGAAGAAGGATTTGGAAGGCGTCATCAGTGGGTTGCAAGAGTACCTGGGGACCATCAAAGGCCAGGCAGCTCAGGCCCAAAATGAGTGCAGGAAGCTGCAGGATGAGAAAGAGACACTGCTGCAGAGACTGACAGAAGTCAAGCAGGAGAAGGACGAACTGGAAATAGTTGCCATGGATGCAGAGAATATGAGGAAG
Seq A exon
GAGCTCGCAGAGCTGGAAAATGCCCTCCAGGAGCAGCATGAGGTGAACGCATCCCTGCAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGCTGAAACTAAAGGATGCTGAAACCAGCCAGCTCAAGCAGGAGTTAGAAAACCTCGTAAGGCGCACTCAG
Seq C2 exon
CTAGAACAATCGGTGCTTCAAACAGAGCTGGAGAAGGAAAGACAGTCCCTCAGGGATGCCCTGGGCAAAGCCCAGTCCTCAGAAGAGAAGCAACAGGAGAACAGTGAGCTCCGTGCACAGCTTAAGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'21-32,'21-29,22-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.585 C2=0.759
Domain overlap (PFAM):
C1:
PF138511=GAS=PD(64.7=89.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAAGGCGTCATCAGTGG
R:
TCCCTGAGGGACTGTCTTTCC
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]