HsaEX0014669 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123887994-123900957:+
Coord C1 exon
chr9:123887994-123888214
Coord A exon
chr9:123898084-123898260
Coord C2 exon
chr9:123900823-123900957
Length
177 bp
Sequences
Splice sites
3' ss Seq
AACCCACTGAATCTTTCTAGGAG
3' ss Score
6.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCAGATAGCAGCAAATGAAGCCCTGAAGAAGGATTTAGAAGGTGTTATCAGTGGGTTGCAAGAATACCTGGGGACCATTAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTGCGGGATGAGAAAGAGACATTGTTGCAGAGATTGACAGAAGTCGAGCAGGAGAGAGACCAGCTGGAAATAGTTGCCATGGATGCAGAAAATATGAGGAAG
Seq A exon
GAGCTTGCAGAGCTAGAAAGTGCCCTCCAAGAGCAGCATGAGGTGAATGCATCTTTGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAGCTAGAGGCTCGGCTAAACCTAAGGGATGCTGAAGCCAACCAGCTCAAGGAAGAGTTGGAAAAAGTAACAAGACTTACCCAG
Seq C2 exon
TTAGAACAATCAGCCCTTCAAGCAGAACTTGAGAAGGAAAGGCAAGCCCTCAAGAATGCCCTTGGAAAAGCCCAGTTCTCAGAAGAAAAGGAGCAAGAGAACAGTGAGCTCCATGCAAAACTTAAACACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX4-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.334 A=0.593 C2=0.733
Domain overlap (PFAM):
C1:
PF138511=GAS=PD(63.4=86.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGCAAGAATACCTGGGG
R:
TGGGCTTTTCCAAGGGCATTC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)