GgaEX0026788 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9060382-9062316:+
Coord C1 exon
chr17:9060382-9060602
Coord A exon
chr17:9061126-9061302
Coord C2 exon
chr17:9062182-9062316
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAGTGAATGTAAAATTCCAGGAA
3' ss Score
2.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAAATAGCAACAAACGAAGCACTGAAAAGGGATTTAGAAAGCATCATAATTGGATTACAGGAATACCTGGAAAGCGTTAAGCATCAAGCAAAACAGGCCAATGATGAATGTAAGGAGTTGCAGAAGGATAAAGAATCTTTGTTTCAGAGACTGGCAGATCTAGAGGATGAAAGAAATAGCCTGAAAATAGTTGTCATGGATGCCGAAAATATGAGAAAA
Seq A exon
GAAATAGCAATGCTTGAAGGCGCACTTCAAGAGCAGCGAGAAATAAATGAATCACTCAGAGAAGGACAAGGGGATGTCAGTGCCTACGAGGCTGAACTGGAAGCCCAGCTAAGAGAAAGAGACACTGAAGCCAATCAGCAAAAGGAAGAATTGGAAAGGCTGAAACAACTCAGCCAG
Seq C2 exon
ATGGAACTGTCAGCTCTGCAAGCTGAACTTGAGAAAGAAAGGCAAGCTTTAGAGAATGCTCTGACCAAAGCACAATTAGCAGAAGAGAAGGAACAAGAAAACTATAAGCTGCTTTCTCAGTTCAAACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023482_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.299 A=0.771 C2=0.365
Domain overlap (PFAM):
C1:
PF123253=TMF_TATA_bd=PD(16.9=13.5),PF138511=GAS=PD(57.6=91.9)
A:
NO
C2:
PF059116=DUF869=FE(19.8=100),PF055827=Peptidase_U57=FE(44.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATAGCAACAAACGAAGCACTG
R:
CTTGCAGAGCTGACAGTTCCA
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event