MmuEX0010870 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35135468-35140621:+
Coord C1 exon
chr2:35135468-35135688
Coord A exon
chr2:35137632-35137808
Coord C2 exon
chr2:35140487-35140621
Length
177 bp
Sequences
Splice sites
3' ss Seq
AACATGCTGAATCTTTGCAGGAG
3' ss Score
6.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCAGATAGCAGCAAACGAAGCTCTGAAGAAGGATTTAGAAGGTGTCATCAGTGGGTTGCAAGAGTACCTTGGAACCATCAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGGAAGCTACAGGATGAGAAAGAGACATTGCTGCAGAGACTGACAGAAGTCCAGCAGGAGAAGGAGGAACTTGAACTCATTGCCATGGATGCAGAAAATATGAGGAAG
Seq A exon
GAGCTTGCAGAGCTAGAAAGTGCCCTCCAGGAACAGCATGAGGTGAATGCATCCCTACAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGTTAAAACTAAAAGACGCTGAAACCAGCCAGCTCAAGCAAGAGTTGGAAAAACTCCTAAGGCGTACTCAG
Seq C2 exon
TTAGAGCAATCGGTGCTTCAAACAGAACTGGAGAAGGAGAGAGAATCCCTCAGGGATGCCCTGGGCAAAGCCCAGTCCTCAGAAGAGAAACAACAGGAGAACAACGAGCTCCGTACACAGCTGAAGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.663 C2=0.798
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(54.1=100),PF0163315=Choline_kinase=FE(56.6=100)
A:
NO
C2:
PF059116=DUF869=PU(4.5=24.4)
Main Skipping Isoform:
ENSMUST00000028237fB7998
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCAGGAAGCTACAGGA
R:
CTGCTTCAGCTGTGTACGGAG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types