BtaEX6036637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009975 | PBX4
Description
pre-B-cell leukemia homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr7:3679090-3683304:+
Coord C1 exon
chr7:3679090-3679225
Coord A exon
chr7:3682694-3682850
Coord C2 exon
chr7:3683198-3683304
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTGTGTCCACAGGTC
3' ss Score
14.08
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCGTAAGCGGCAGAATTTCAGCAAGCAAGCCACAGAAGTGCTGAATGAATACTTTTATTCCCATTTGAGCAACCCATACCCCAGTGAAGAAGCCAAAGAGGAGCTGGCCAGGAGGGGTGGCATCACGGTCTCCCAG
Seq A exon
GTCTCCAACTGGTTCGGCAACAAAAGAATTCGGTATAAAAAGAACATGAGGAAGTTTCAAGAAGAGGCTACCATCTACACAGCCAAGACGGCAGTGGACGCCACCGAAGTCAGGGGCTCAGGGCGCCAGGCCAGCCCCCCATCGATGTCCCACTCCA
Seq C2 exon
GCTCCTCTGGCCCATTTCCGCTGACTGGCCCCGGAGACGCACTTATCCGCCTGCAGACGCTGGCCTGCGTCCAGCCCAGCCCCCGGGGAGGAGGCCTTCTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009975-'9-9,'9-8,11-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.453 C2=0.667
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(75.0=97.8)
A:
PF0004624=Homeobox=PD(21.7=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAGCGGCAGAATTTCAGC
R:
CCAGAAGGCCTCCTCCCC
Band lengths:
237-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]