DreEX0053818 @ danRer10
Exon Skipping
Gene
ENSDARG00000052150 | pbx4
Description
pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
Coordinates
chr3:52798354-52816935:+
Coord C1 exon
chr3:52798354-52798489
Coord A exon
chr3:52807096-52807252
Coord C2 exon
chr3:52816849-52816935
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTGGAGTTGTTTCGCTTCAGGTC
3' ss Score
6.68
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACGTAAGAGACGCAACTTCAATAAGCAGGCCACAGAGGTGCTGAACGAGTACTTCTACTCTCACCTCTCCAACCCGTACCCCAGTGAGGAAGCCAAGGAAGAGCTGGCCAAGAAGTGTGGGATCACTGTCTCTCAG
Seq A exon
GTCTCGAATTGGTTTGGCAACAAGAGAATTCGGTACAAGAAGAACATTGGTAAGTTCCAGGAGGAAGCAAACCTGTACGCCGTTAAAACAGCCGTGGACGCCGCCAATGTGTCGGCACAGGCCAGCCAGGCAAACTCTCCAGCAACACCCAACTCAG
Seq C2 exon
GTGGATATCCTGCACCGTGCTACACACCTGACGGCAGGCTATGAAGATCTGTCAGCAAGTCCTCTTTACACCCCACACCGTCTAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052150-'8-16,'8-13,10-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.269 C2=0.372
Domain overlap (PFAM):
C1:
PF070346=ORC3_N=FE(48.9=100),PF0004624=Homeobox=PU(75.0=97.8),PF035088=Connexin43=WD(100=19.6)
A:
PF0004624=Homeobox=PD(21.7=24.5)
C2:
PF070346=ORC3_N=PD(1.1=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACGCAACTTCAATAAGCAGG
R:
GTCTAGACGGTGTGGGGTGTA
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]