RnoEX0063690 @ rn6
Exon Skipping
Gene
ENSRNOG00000010736 | Pbx4
Description
PBX homeobox 4 [Source:RGD Symbol;Acc:1305100]
Coordinates
chr16:21305485-21308959:-
Coord C1 exon
chr16:21308824-21308959
Coord A exon
chr16:21306016-21306169
Coord C2 exon
chr16:21305485-21305591
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCATCTATCCACAGGTC
3' ss Score
12.18
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAAGCCACCGAGGTGCTGAATGAATACTTCTATTCCCATCTGAGCAACCCTTACCCCAGTGAAGAGACCAAGGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
Seq A exon
GTCTCTAACTGGTTCGGCAACAAAAGAATCCGGTACAAAAAGAATACGGGGAAATTTCAAGAAGAAGCCACCATGTACACGGGGAAAACATCCACAGTCACTAAGACCCGGGTCTCCGGGGGTCAGACCAGCTGCCAGTCCACACCCAGCCCAG
Seq C2 exon
ACTCCTGTGGCCCCTTCCCACTGACCAGTGGAAGTGACATGGTTCTCACCCTGCGGACCCTGGCCTTCCTCCAGCCCCCACCCGGAGGAGTCTGCCTACAGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010736_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.606 C2=0.361
Domain overlap (PFAM):
C1:
PF083976=IMD=PD(26.8=71.7),PF0004624=Homeobox=PU(75.0=97.8)
A:
PF0004624=Homeobox=PD(21.7=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGCGGAATTTCAGCAA
R:
CTGTAGGCAGACTCCTCCGG
Band lengths:
234-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]