GgaEX0020085 @ galGal3
Exon Skipping
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30305363-30306577:-
Coord C1 exon
chrUn_random:30306442-30306577
Coord A exon
chrUn_random:30305639-30305795
Coord C2 exon
chrUn_random:30305363-30305469
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACAGGGCTCTGAATCTCCAGGTT
3' ss Score
5.84
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GCGTAAACGGCGTAACTTCAGCAAGCAGGCAACAGAAGTGCTGAATGAGTATTTCTATTCGCACCTGAGCAACCCTTACCCCAGCGAAGAGGCCAAAGAGGAGCTCGCAAAGAAGGGTGGCATCACCGTTTCGCAG
Seq A exon
GTTTCCAACTGGTTCGGTAACAAAAGAATTCGGTACAAGAAGAACATGGGGAAGTTCCAAGAAGAAGCCAACATTTACGCTGCGAAAACAGCGGTGGATGCGACCAACGTTGTGGCTCAGGGCAACCGGGCAAACTCCCCATCAACACCAAATTCGG
Seq C2 exon
CTTCCTCTGGCTCTTTTAAGATGACCAATTCTGGAGATTCCTTCATAAATCTGCAGTCGTTGACCTCCTACCAGAGCTCCCCGGTGGGAGGCAACGTGCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.321 C2=0.500
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(75.0=97.8)
A:
PF0004624=Homeobox=PD(21.7=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAACGGCGTAACTTCAGC
R:
GTGACTGCACGTTGCCTCC
Band lengths:
240-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]