HsaEX6094147 @ hg38
Exon Skipping
Gene
ENSG00000105717 | PBX4
Description
PBX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr19:19563509-19569584:-
Coord C1 exon
chr19:19569449-19569584
Coord A exon
chr19:19564933-19565089
Coord C2 exon
chr19:19563509-19563615
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGACTCCTGTGTGTCCGCAGGTC
3' ss Score
13.06
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCGACGGAAGTGCTGAATGAGTATTTTTACTCCCATCTGAACAACCCTTACCCCAGCGAAGAAGCCAAAGAAGAGCTGGCCAGGAAGGGCGGCCTCACCATCTCCCAG
Seq A exon
GTCTCTAACTGGTTTGGCAACAAAAGAATCCGGTATAAAAAGAACATGGGGAAGTTTCAAGAAGAGGCTACCATTTACACGGGTAAAACGGCTGTGGATACCACGGAAGTTGGGGTCCCAGGGAACCACGCCAGCTGCCTGTCAACACCTAGCTCCG
Seq C2 exon
GCTCCTCTGGACCCTTCCCGCTGCCCAGCGCTGGGGACGCCTTCCTCACCCTGCGGACTCTGGCCTCTCTCCAGCCTCCTCCTGGGGGAGGCTGCCTGCAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105717-'20-19,'20-15,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.528 C2=0.750
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(75.0=97.8)
A:
PF0004624=Homeobox=PD(21.7=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCGGCGGAATTTCAG
R:
CAGGAGGAGGCTGGAGAGAG
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains