BtaEX6037836 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010179 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:HGNC:14864]
Coordinates
chr7:15769738-15775074:-
Coord C1 exon
chr7:15774962-15775074
Coord A exon
chr7:15772238-15772306
Coord C2 exon
chr7:15769738-15769977
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCTCTGTCCCCCAGGTG
3' ss Score
12.47
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGAATACTGGATTGATCCCAATCAAGGCTGCGCGCGGGATGCCCTCAGGGTTTTCTGTAACTTCACGGCAGGAGGAGAAACCTGCCTCTACCCAGACAAGAAGTTTGAGACC
Seq A exon
GTGAAACTGGCCTCTTGGTCCAAAGAAAAGCCAGGTGGCTGGTATAGCACATTCCGTCGAGGGAAAAAG
Seq C2 exon
TTCTCCTACGTGGATGCCGATGGGGCCGCAGTGAGCGTGGTACAGCTGACCTTCCTGAAGTTGCTGAGTGCCACGGCCCGCCAGAGCTTCACATTCACCTGCCAGAACTCGGCCGCCTGGCTGGACGAAGCTGCAGGTGACCACAGCCGCTCTGCCCGTTTCCTCGGGGCCAATGGGGAGGAGGTATCCTTCAACCAGATGGCAGCCGCCACCATCACAGTCCCCTACGATGGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010179-'76-91,'76-88,77-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.3=100)
A:
PF0141013=COLFI=FE(10.3=100)
C2:
PF0141013=COLFI=FE(36.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCCCTCAGGGTTTTCTG
R:
CTGGCAGGTGAATGTGAAGCT
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]