RnoEX0023454 @ rn6
Exon Skipping
Gene
ENSRNOG00000020525 | Col5a3
Description
collagen type V alpha 3 chain [Source:RGD Symbol;Acc:70922]
Coordinates
chr8:21787341-21788623:-
Coord C1 exon
chr8:21788511-21788623
Coord A exon
chr8:21787909-21787977
Coord C2 exon
chr8:21787341-21787580
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCCATCCACCCTCAGGTG
3' ss Score
11.5
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAGAGTACTGGATTGACCCCAATCAGGGCTGTGCACGGGACGCCTTCAAGGTCTTCTGCAACTTCACTGCCGGAGGTGAGACCTGTCTCTACCCAGACAAGAAGTTTGAGACG
Seq A exon
GTGAAACTGGCCTCCTGGTCCCGAGAAAAGCCTGGAGGTTGGTACAGCACCTTCCGCCGAGGGAAGAAG
Seq C2 exon
TTCTCCTATGTGGATGCTGACGGCTCCCCGGTGAATGTGGTCCAGTTGACCTTCCTGAAGTTGTTGAGCGCTGCAGCCCATCAGAGGTTCACTTACACCTGCCAGAACTCCGCAGCATGGCTGGACGAAGCTTCAGGTGACCACAGGCACTCTATCCGCTTCCAAGGGACCAACTGGGAAGAGTTGTCCTTCAACCAGACAACAGCAGCCACCATCAAGGTCCCCCATGATGGCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020525-'81-86,'81-83,82-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.4=100)
A:
PF0141013=COLFI=FE(10.3=100)
C2:
PF0141013=COLFI=FE(37.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGCAACTTCACTGCCG
R:
CGGAGTTCTGGCAGGTGTAAG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]