DreEX6034385 @ danRer10
Exon Skipping
Gene
ENSDARG00000101816 | col5a3b
Description
collagen, type V, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-110728-4]
Coordinates
chr1:58548303-58549013:-
Coord C1 exon
chr1:58548901-58549013
Coord A exon
chr1:58548758-58548826
Coord C2 exon
chr1:58548303-58548536
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTTGGTCACAGGTG
3' ss Score
9.51
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTGTACTGGATCGACCCTAACCAGGGCTGCCACAGAGACGCCTTTAAAGTGTTCTGCAACTTCACCGCTGACGGAGAGACGTGTCTGCAGCCACACAGCAGCGTGCAGACG
Seq A exon
GTGAAAATGGCTTCATGGAGCAAAGAGAAGCCCGGAACCTGGTTCAGCACGTTCAAGAAGGGCTCACAG
Seq C2 exon
TTCTCCTATGTGGATGTGGATGGAAACCCTGTTCATGTGGTGCAGCTGGGCTTCCTGAAGCTGTTGAGTGCGACGGCGCGTCAGAGCTTCACGTATGTGTGTCAGAACTCTGCCGGCTGGCTGGACGGATCCACGCGCAGCTACACACACGCACTGCGCTTCAGGGGCAGCAACGGAGACGAGCTGACGCAGCGCAACACACACTACATACAGCCCACGCATGACGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101816-'67-68,'67-67,68-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.051
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACAGAGACGCCTTTAA
R:
ACATACGTGAAGCTCTGACGC
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]