HsaEX6092770 @ hg19
Exon Skipping
Gene
ENSG00000080573 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:14864]
Coordinates
chr19:10071327-10077102:-
Coord C1 exon
chr19:10076990-10077102
Coord A exon
chr19:10073495-10073563
Coord C2 exon
chr19:10071327-10071566
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTTTCTCTTCCAGGTG
3' ss Score
14.63
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGAATACTGGATTGACCCCAACCAGGGCTGCGCGCGGGACTCGTTCAGGGTTTTTTGCAACTTCACGGCGGGAGGAGAGACCTGCCTCTATCCCGACAAGAAGTTTGAGATC
Seq A exon
GTGAAATTGGCCTCCTGGTCCAAGGAAAAGCCTGGAGGCTGGTATAGCACATTCCGTCGAGGGAAGAAG
Seq C2 exon
TTCTCCTACGTGGACGCCGACGGGTCCCCAGTGAATGTCGTGCAGCTGAACTTCCTGAAACTGCTGAGTGCCACAGCTCGCCAGAACTTCACCTACTCCTGCCAGAATGCAGCTGCCTGGCTGGACGAAGCCACGGGTGACTACAGCCACTCCGCCCGCTTCCTTGGCACCAATGGAGAGGAGCTGTCTTTCAACCAGACGACAGCAGCCACTGTCAGCGTCCCCCAGGATGGCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080573-'65-66,'65-65,66-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.3=100)
A:
PF0141013=COLFI=FE(10.3=100)
C2:
PF0141013=COLFI=FE(36.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGACTCGTTCAGGGTTTTT
R:
GTAGGTGAAGTTCTGGCGAGC
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)