BtaEX6038713 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19237781-19239412:+
Coord C1 exon
chr7:19237781-19237868
Coord A exon
chr7:19238157-19238268
Coord C2 exon
chr7:19239254-19239412
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCTCCCCCCACCAGCAT
3' ss Score
8.23
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTCAGATTGACGTCTCTGAGATCCAGCAGAGTTTCCGAGCCCTAGGTATTTCCATCTCACTGGAACAGGCAGAGAAAATCCTGCACAG
Seq A exon
CATGGACCGTGATGGCACCATGACCATTGACTGGCAGGAGTGGCGTGACCACTTCCTGTTGCATTCGCTGGAGAACGTGGAAGATGTGCTGTATTTCTGGAAGCATTCCACG
Seq C2 exon
GTCCTGGATATTGGTGAGTGCCTGACTGTCCCGGATGAGTTCTCGGAGCAGGAGAAGCTGACTGGCATGTGGTGGAAGCAGCTGGTGGCGGGTGCGGTGGCGGGGGCTGTGTCCCGAACAGGCACAGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.0=100)
A:
PF134991=EF-hand_7=PD(26.1=47.4)
C2:
PF0015322=Mito_carr=PU(35.6=60.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGTCTCTGAGATCCAGC
R:
CTGCATGAAGACCTTGAGGCG
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]