HsaEX6092264 @ hg38
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6453981-6457590:-
Coord C1 exon
chr19:6457503-6457590
Coord A exon
chr19:6456420-6456531
Coord C2 exon
chr19:6453981-6454088
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTTTCTTCCCCCCAGCAT
3' ss Score
10.15
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTCACATTGATGTCTCTGAGATCCAACAGAGTTTCCGAGCTCTGGGCATTTCCATCTCGCTGGAGCAGGCTGAGAAAATTTTGCACAG
Seq A exon
CATGGACCGAGACGGCACAATGACCATTGACTGGCAAGAATGGCGCGACCACTTCCTGTTGCATTCGCTGGAAAATGTGGAGGACGTGCTGTATTTCTGGAAGCATTCCACG
Seq C2 exon
ATCAAGAGGGCCATCCTGGGGCAGCAGGAGACACTGCATGTGCAGGAGCGCTTCGTGGCTGGCTCCCTGGCTGGTGCCACAGCCCAAACCATCATTTACCCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648_MULTIEX1-4/14=3-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.0=100)
A:
PF134991=EF-hand_7=PD(26.1=47.4)
C2:
PF0015322=Mito_carr=PD(24.3=24.3),PF0015322=Mito_carr=PU(28.0=70.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATTGATGTCTCTGAGATCCA
R:
TCCATAGGGTAAATGATGGTTTGGG
Band lengths:
195-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains