DreEX0072295 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54307621-54309958:-
Coord C1 exon
chr1:54309871-54309958
Coord A exon
chr1:54309256-54309367
Coord C2 exon
chr1:54307621-54307779
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGTTTATATGTTCATACAGTAT
3' ss Score
5.57
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GTGAAGTGGATGTCGGGGAGATCCAGCAGTCCTTACACAATCTCGGCGTGGACATCACACTAGAACAGGCTGCTAAAATACTGCAAAG
Seq A exon
TATGGATAAAGATCATTCCATGACTATTGACTGGATCGAGTGGCGAGATCACTTCCTGTTCAACCCTCTACACAACATGGAGGAAATCGCTCAGTTCTGGAAGCACTCAGTG
Seq C2 exon
ATGCTGGACATCGGGGAGCACCTGACGGTTCCAGACGAGTTCTCAGAGAAGGAGAAGCGATCCGGGTTCGTGTGGCGGCAGCTGATGGCAGGAGCCGTGGCAGGATCAGTGTCCCGGACAGGAACCGCACCGCTCGACAGACTCAAGGTCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(46.0=100)
A:
PF134991=EF-hand_7=PD(28.6=47.4)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGGATGTCGGGGAGAT
R:
CTGCAGGAAGACCTTGAGTC
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]