RnoEX6038537 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9990710-9994170:+
Coord C1 exon
chr9:9990710-9990797
Coord A exon
chr9:9991732-9991843
Coord C2 exon
chr9:9994012-9994170
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTGCCAACTCTACCCCCAGCAT
3' ss Score
6.66
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTCACATCGATGTCTCTGAGATTCAGCAGAGCTTCCGTGCACTGGGTTTCTCCATCTCAATGGAGCAAGCAGAGAAAATCCTACACAG
Seq A exon
CATGGACCGTGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGCTGCACTCTCTGGAGAATGTGGAGGATGTCCTTTATTTCTGGAAGCATTCAACA
Seq C2 exon
GTCCTGGACATTGGTGAATGCCTAACGGTGCCTGATGAGTTCTCCAAGCAAGAGAAACTTACAGGCATGTGGTGGAAGCAACTGGTGGCCGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTATTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781-'3-9,'3-5,4-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(36.2=100)
A:
PF134991=EF-hand_7=PD(40.0=84.2)
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGATGTCTCTGAGATTCAGC
R:
TGCATGAATACCTTGAGTCGGT
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]