HsaEX6092264 @ hg19
Exon Skipping
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6454570-6457601:-
Coord C1 exon
chr19:6457514-6457601
Coord A exon
chr19:6456431-6456542
Coord C2 exon
chr19:6454570-6454728
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTTTCTTCCCCCCAGCAT
3' ss Score
10.15
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTCACATTGATGTCTCTGAGATCCAACAGAGTTTCCGAGCTCTGGGCATTTCCATCTCGCTGGAGCAGGCTGAGAAAATTTTGCACAG
Seq A exon
CATGGACCGAGACGGCACAATGACCATTGACTGGCAAGAATGGCGCGACCACTTCCTGTTGCATTCGCTGGAAAATGTGGAGGACGTGCTGTATTTCTGGAAGCATTCCACG
Seq C2 exon
GTCCTGGACATTGGCGAGTGCCTGACAGTGCCGGACGAGTTCTCAAAGCAAGAGAAGCTGACGGGCATGTGGTGGAAACAGCTGGTGGCCGGCGCAGTGGCAGGTGCCGTGTCACGGACAGGCACGGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.0=100)
A:
PF134991=EF-hand_7=PD(26.1=47.4)
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATTGATGTCTCTGAGATCCA
R:
CTGCATGAAGACCTTGAGGCG
Band lengths:
247-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)