MmuEX6078688 @ mm9
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57193207-57196092:-
Coord C1 exon
chr17:57196005-57196092
Coord A exon
chr17:57194697-57194808
Coord C2 exon
chr17:57193207-57193365
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTGCCAACCCTACCTCTAGCAT
3' ss Score
6.59
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTCACATAGATGTCTCTGAGATTCAACAGAGCTTCCGAGCACTAGGTATCTCCATCTCACTGGAGCAAGCAGAGAAAATCCTACACAG
Seq A exon
CATGGACCGCGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGTTGCACTCTCTGGAGAACGTGGAGGATGTCCTGTATTTCTGGAAGCATTCTACA
Seq C2 exon
GTCCTGGACATCGGTGAATGCCTGACGGTGCCTGATGAGTTCTCCCAGGAAGAGAAACTTACAGGAATGTGGTGGAAACAGCTGGTGGCTGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTATTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'3-5,'3-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.3=100)
A:
PF134991=EF-hand_7=PD(26.9=47.4)
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATAGATGTCTCTGAGATTCA
R:
TGAATACCTTGAGTCGGTCCAGA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: