BtaEX6043716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25093521-25112990:+
Coord C1 exon
chr11:25093521-25093638
Coord A exon
chr11:25109622-25109724
Coord C2 exon
chr11:25112891-25112990
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTCTTGGACAGGAG
3' ss Score
9.43
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GATACTTTTTTCTATTCATTGGTCTATGATCCCTCAGTGAAAACACTATTAGCTGACAAAGGTGAAATCAGAGTGGGACCTAGATATCAAGCAGACATTCCAGAAATGCTCTTAGAAG
Seq A exon
GAGAATCAGATGAGAGAGAACAGTCAAAATTGGAAGTGAAAGTTTGGGACCCAAATAGCCCACTTACAGACCGACAGATTGACCAATTTTTAGTTGTAGCCCG
Seq C2 exon
TGCTGTTGGGACATTTGCTCGAGCCCTTGATTGTAGCAGTTCTGTAAGGCAACCTAGTTTGCATATGAGTGCAGCTGCAGCTTCTCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073-'6-14,'6-13,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.025 A=0.000 C2=0.206
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.8=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTATTCATTGGTCTATGATCCCT
R:
CAGGGTGATGTCTCGAGAAGC
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]