GgaEX0014716 @ galGal4
Exon Skipping
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23325182-23344132:+
Coord C1 exon
chr3:23325182-23325299
Coord A exon
chr3:23337616-23337718
Coord C2 exon
chr3:23344033-23344132
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCCCATCTACCTTTTGACAGGAG
3' ss Score
7.82
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATACTTTTTTTTATTCATTGGTGTATGATCCATCACTGAAAACACTTTTGGCAGACAAAGGAGAAATCAGAGTGGGGCCTAGATATCAAGCAGATGTGCCTGACATGCTTGCAGAAG
Seq A exon
GAGAATTAGATGACAGAGAACAGGCAAAGCTGGAAGTAAAAATATGGGATCCAGATAGCCCCCTTACAGACCGTCAGATTGACCAGTTTTTAGTTGTAGCACG
Seq C2 exon
TGCGGTTGGCACATTTGCTCGGGCATTGGACTGCAGTAGTTCTGTCAGGCAACCTAGTTTACACATGAGTGCAGCTGCTGCTTCCCGAGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.006 A=0.009 C2=0.382
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(12.3=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGGTGTATGATCCATCACTGA
R:
CAGTGTGATGTCTCGGGAAGC
Band lengths:
203-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]