HsaEX1024404 @ hg38
Exon Skipping
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42644127-42659862:+
Coord C1 exon
chr2:42644127-42644244
Coord A exon
chr2:42656200-42656302
Coord C2 exon
chr2:42659763-42659862
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTATTTTTGGACAGGAG
3' ss Score
6.76
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATACCTTCTTCTACTCATTGGTCTATGACCCCTCATTGAAAACACTATTAGCTGACAAAGGTGAAATCAGAGTGGGACCTAGATATCAAGCAGACATTCCAGAAATGCTGTTAGAAG
Seq A exon
GAGAATCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAAGTTTGGGATCCAAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCACG
Seq C2 exon
TGCTGTTGGGACATTCGCCAGAGCCCTGGATTGCAGCAGTTCTGTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935_MULTIEX1-1/10=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.006 A=0.036 C2=0.489
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATACCTTCTTCTACTCATTGGTCT
R:
CAAGGTGATGTCTCGGGAAGC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains