RnoEX0056173 @ rn6
Exon Skipping
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:6967834-6979050:+
Coord C1 exon
chr6:6967834-6967939
Coord A exon
chr6:6975464-6975566
Coord C2 exon
chr6:6978951-6979050
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGTCTTTGGGCAGGCG
3' ss Score
9.04
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TACTCATTGGTGTATGACCCTTCCGTGAAAACATTATTGGCTGACAAAGGTGAAATCAGAGTGGGCCCAAAGTACCAAGCCGACATTCCAGACGTGCTGCCGGAAG
Seq A exon
GCGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGTCCGCTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCG
Seq C2 exon
TGCCGTGGGAACATTTGCCCGTGCCCTGGATTGCAGCAGCTCTGTGAGGCAGCCCAGCCTGCATATGAGCGCGGCTGCGGCCTCCCGAGACATCACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(19.5=41.7),PF0144819=ELM2=PU(30.9=47.2)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGTGTATGACCCTTCCGT
R:
CAACGTGATGTCTCGGGAGG
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]