MmuEX0029882 @ mm10
Exon Skipping
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83755559-83766606:+
Coord C1 exon
chr17:83755559-83755676
Coord A exon
chr17:83762911-83763013
Coord C2 exon
chr17:83766507-83766606
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGTCTTTGGGCAGGAG
3' ss Score
8.66
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GATACCTTCTTCTACTCACTGGTATACGACCCTTCAGTGAAAACATTATTGGCTGACAAAGGTGAAATCAGAGTGGGCCCAAAGTACCAAGCTGACATTCCAGACATGCTACCAGAAG
Seq A exon
GAGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCG
Seq C2 exon
TGCCGTGGGAACATTTGCCCGAGCCCTGGACTGCAGCAGCTCCGTGAGGCAACCCAGCCTTCACATGAGTGCAGCCGCAGCCTCCCGAGACATCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.002 C2=0.201
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(31.5=42.5)
A:
PF0144819=ELM2=FE(61.1=100)
C2:
PF0144819=ELM2=PD(5.6=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATACCTTCTTCTACTCACTGGTAT
R:
CAAGGTGATGTCTCGGGAGGC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types