DreEX0047701 @ danRer10
Exon Skipping
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25148663-25163403:+
Coord C1 exon
chr12:25148663-25148780
Coord A exon
chr12:25160325-25160427
Coord C2 exon
chr12:25163304-25163403
Length
103 bp
Sequences
Splice sites
3' ss Seq
AAACTTAAATGTTTCTTTAGGAG
3' ss Score
6.4
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GACACATTTTTTTACTCATTGGTGTACGACCCAACACAGAAGACGCTATTGGCGGACAAGGGGGAGATTCGCGTTGGTCCACGTTTTCAGGCTGATGTCCCTGAAATGCTACAGGAAG
Seq A exon
GAGAAGCTGATGACAGAGACCAGTCCAAACTGGAGATGAAGATGTGGGATCCAGAGTGTCCGCTGACCAACAAACAGATCGACCAGTTTCTTGTGGTTGCCCG
Seq C2 exon
AGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.006 C2=0.347
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCATTGGTGTACGACCCA
R:
CAGTGTGATGTCTCGTGAGGC
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]