BtaEX6046284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98446881-98465407:-
Coord C1 exon
chr11:98464930-98465407
Coord A exon
chr11:98454023-98454062
Coord C2 exon
chr11:98446881-98447009
Length
40 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCTCTCCTTCCAGGGC
3' ss Score
13.16
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGTTCTTCAAGTTCAAGGGGTTTGGGAGTCTCTCCAACCTTCCGCGGTCCTTTACTCTGAGACGATCTTTGGCCCCCAACAGTATCCGGCCCCAGGTGGAGGCTGACACCTTCGATGCCACACAGGATGACATGGTGACAGTCCCCAAGAGCCCCCCGGCCTATGCCCGCTCCAGCGACATGTACAGCCACATGGGCACCATGCCTCGCCCCAGCATCAAGAAGGCTCAGGGCAAACAGGCCACCCAGAAGGCCCAGGAAGTTGGCCCTGAGCCCCAGGTGGTACCCCGAAGCCTGCCTGACCCTCCAGGCTTGGAGGCAGCTGAGAAGGTGGTGCCAGGGACCATTGCCTCCAGGGAGGACACCCCAACAGTGGGACCCAACCCTTCAGCAGTGGAAGTGGACCCCACAAGAAAACCTGAGGATGCCAGGCCAGACACAGAAGAAGGGCGAGACCCCAAGAATGTGCCCTCAGAAAG
Seq A exon
GGCCACTGCAGAGCCGGAGGCTGGCGGGGACTATGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATCTTAGACTCATCGCCTGAGAAACTGCACAAGGAGTTGGAGGAAGAGCTCAAACTCAGCAGCACAGATCTCCGCAGCCATGCCTGGTACCACGGCCGCATCCCACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375-'1-7,'1-2,4-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.714 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCAGTGGAAGTGGACC
R:
GTGCAGTTTCTCAGGCGATGA
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]