GgaEX1052284 @ galGal4
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr17:4906124-4917397:+
Coord C1 exon
chr17:4906124-4906307
Coord A exon
chr17:4909910-4909949
Coord C2 exon
chr17:4917269-4917397
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTCCCCCTTCTAGCCA
3' ss Score
9.93
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTCTCCAGGGGCAGAAAAGGCCAGGATGGACCAAGAGATCCCAGGGAACAGCCCCAGCCCTGGGATGGAGGCACCGAGCCCCAGCCTGGCCCCCAGCCCCAGTGCAGCATCAGGAGCAGAGACCACGGATGGGGATTTCCAGGAAAAGGGGCAAGAACGTCCCAGCGAGAGCTCCCCAGACAG
Seq A exon
CCACCACGATGGCCTGGAGTCCAGCAGCGAATACGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036-'2-8,'2-4,4-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Skipping Isoform:
ENSGALT00000008075fB11879
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCAGGAGCAGAGACCA
R:
GCTCCTTGTGAAGCTTCTCCG
Band lengths:
134-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]