MmuEX6100609 @ mm9
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32588312-32600399:+
Coord C1 exon
chr2:32588312-32588445
Coord A exon
chr2:32593039-32593078
Coord C2 exon
chr2:32600271-32600399
Length
40 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTTTCTTCTTCCAGGAC
3' ss Score
12.52
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCACACATGATGTCCCCTCAGAAGATGAGGAAGCCAAGCCTCAGAGAGAGGGAAGCAGGTGTCAGAGCTGCGAATCTCTTCTCGGGCCTTATGACCAGACCCTAAGGCCCAAAGGAAGAAGCTCAGGACAGAGG
Seq A exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'3-9,'3-4,5-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.476 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCAGAGCTGCGAATCTC
R:
CTCTTCCAGCTCCTTGTGCAG
Band lengths:
140-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: