MmuEX6100609 @ mm10
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32724937-32744879:+
Coord C1 exon
chr2:32724937-32725399
Coord A exon
chr2:32737519-32737558
Coord C2 exon
chr2:32744751-32744879
Length
40 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTTTCTTCTTCCAGGAC
3' ss Score
12.52
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTTCTTCAAGTTCAAGGGCCTTGGGAGCCTTTCCAATCTCCCGCGGTCCTTTTCTCTGAGACGGTCTTCAGCCTCTGCTAGTATCCGGTCTTGTCCGGAGCCTGACACCTTTGAAGCCACACAGGATGACATGGTGACACTCCCAAAGAGTCCTCCTGCCTATGCACGTTCTAGTGACATGTACAGCCACATGGGTACCATGCCCCGCCCTAACATCAAGAAGGCTCAGAAACAACAGGCTGTCCAGAAGGCCCAGGAGGTCAGCCGAGAGTCGCACCTGGTTTCTCGAAGGCTGCCAGAGCCACCAGACTTAGAGGCAGCCAAGGAGGCAGGGGAGGGAACTGAAGCCCTACTGGAGGACACGGCACCTTCAGCAGTAGAAGTGGACCCTATGAGGGAACTGGAGGATCTCACAGTAGACACAGAGAAGGAGCAAGTCCCTGGGGATGTGAGCCCAGAAAG
Seq A exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'3-21,'3-9,11-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.500 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACCTTCAGCAGTAGAAG
R:
AGTTTCTCTGGCGAGGAGTCA
Band lengths:
144-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types