RnoEX0080386 @ rn6
Exon Skipping
Gene
ENSRNOG00000054560 | Sh2d3c
Description
SH2 domain containing 3C [Source:RGD Symbol;Acc:1307287]
Coordinates
chr3:11763706-11782877:+
Coord C1 exon
chr3:11763706-11763800
Coord A exon
chr3:11773699-11773738
Coord C2 exon
chr3:11782749-11782877
Length
40 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTCTCTTCCTCCAGGGC
3' ss Score
12.41
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTGTTAGACCGAGCCGGATCCTGGGCTTCAGGTTGTGAACACCAGGAGTCATGACTGCAGTGGGCCGAAGGTGCTCTGCGCTGGGGGCCCGAAG
Seq A exon
GGCTGCTGCAGAACTGGAGGCTGCTGGGGACTATGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTCGACTCCTCGCCAGAGAAGCTGCACAAGGAGCTGGAGGAAGAGCTGAAGCTCAGCAGTACAGACCTCCGCAGCCATGCCTGGTATCATGGACGTATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054560-'3-11,'3-5,4-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCAGGTTGTGAACACCA
R:
TTCAGCTCTTCCTCCAGCTCC
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]