HsaEX0057925 @ hg38
Exon Skipping
Gene
ENSG00000095370 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr9:127751172-127774144:-
Coord C1 exon
chr9:127773990-127774144
Coord A exon
chr9:127761611-127761650
Coord C2 exon
chr9:127751172-127751300
Length
40 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTTTCTCCTTCCAGGGC
3' ss Score
12.92
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AAAGAGGTGATGGTGAAGGCCACTGGCCCTCTAGAGGACACCCCAGCAATGGAACCCAACCCTTCAGCAGTGGAGGTAGACCCCATCAGAAAGCCTGAGGTCCCCACAGGAGACGTAGAAGAGGAGAGACCTCCCAGGGACGTGCACTCAGAAAG
Seq A exon
GGCTGCTGGAGAGCCAGAGGCTGGCAGCGACTATGTGAAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATCCTGGACTCATCGCCAGAGAAACTCCACAAGGAATTGGAGGAGGAGCTCAAACTCAGCAGCACGGATCTCCGCAGCCATGCCTGGTACCATGGCCGCATCCCCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095370_MULTIEX1-3/7=1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.894 A=0.429 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCAGTGGAGGTAGACCC
R:
CCTTGTGGAGTTTCTCTGGCG
Band lengths:
145-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development